Team
Toxoplasmosis & Host-parasite coevolution

Dpt: Environnement, Reproduction, Infections, Cancer

Our research activities

The parasite Toxoplasma gondii is the etiologic agent of toxoplasmosis, a worldwide foodborne zoonosis that is particularly severe when opportunistic or congenital. As an obligate intracellular parasite, Toxoplasma unfolds sophisticated mechanisms to profoundly remodel its host cell niche. Our team is investigating how the parasite is able to hijack host cell signaling pathways after invasion. In doing so, we have discovered a new subfamily of effector proteins that are exported by the parasite into the host cell nucleus to reshape the host's epigenetic program. Our goal is to investigate the modus operandi of these effectors and, in particular, their potential impact on immune evasion, parasite persistence, and transmission to new hosts. A hallmark of the Toxoplasma life cycle is the multiplicity of developmental stages, with the transition from one stage to the next involving precise genetic reprogramming to ensure survival and transmission of the parasite population. We have assigned a role to chromatin shapers, including histone modifications, in determining specific epigenetic programs for each stage. We are studying the function of these molecular epigenetic switches with the goal of manipulating them to induce sexual development in vitro. Our research is also relevant to applications as we have developed serological markers for chronic toxoplasmosis and novel therapeutics to cure toxoplasmosis and other parasite-borne diseases such as malaria.

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Mohamed-Ali HAKIMI

Team leader

06 77 43 79 54

Our research axes

A hallmark of Toxoplasma infection is that the parasite actively diverts host signaling pathways from their original functions to promote its persistence and transmission to multiple hosts. We are studying how the parasite epigenetically alters host gene expression by injecting effector proteins into the cells it invades. This arms race between the parasite and its hosts has led to accelerated adaptive evolution of effector proteins that counteract and limit the strength of the immune response.

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Toxoplasma has a complex life cycle with multiple stages and hosts. All developmental stages have their own transcriptional signature, and switching between stages is controlled by intricate transcriptional cascades in which covalent and non-covalent epigenetic mechanisms act as driving forces. We are investigating how parasite chromatin modifiers cooperate with specific transcription factors to epigenetically regulate the transition to chronicity and sexual development.

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Apicomplexa are responsible for major human infectious diseases such as toxoplasmosis, cryptosporidiosis and malaria. For many of these diseases, current treatments are suboptimal and few alternatives exist. We are exploring the chemical diversity of off-patent drug libraries to identify new pan-apicomplexan drug candidates. Our long-term goal is to feed the antiparasitic drug pipelines with novel drug scaffolds linked to an alternative mode of action to move into preclinical development.

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Serologic testing has long been the first-line means of confirming Toxoplasma infection, but current serologic diagnosis does not always distinguish between acute, latent, and reactivated disease states. Reliable specific serological markers for tissue cysts/bradyzoites have been lacking for both research and medical diagnosis. By developing a new diagnostic toolkit to detect persistent parasites in patient sera, we hope to improve the diagnosis of chronic toxoplasmosis in human medicine.

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Our major publications

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In vitro production of cat-restricted Toxoplasma pre-sexual stages

Ana Vera Antunes, Martina Shahinas, Christopher Swale, Dayana C. Farhat, Chandra Ramakrishnan, Christophe Bruley, Dominique…

Nature 2024 These authors contributed equally: Ana Vera Antunes, Martina Shahinas, Christopher Swale

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Altiratinib blocks Toxoplasma gondii and Plasmodium falciparum development by selectively targeting a kinase critical for splicing.

Swale C@, Bellini V, Matthew W. Bowler, Nardella Flore, Marie-Pierre Brenier-Pinchart, Dominique Cannella, Lucid Belmudes,…

Science Translational Medicine 2022 These authors contributed equally: Christopher Swale, Bellini Valeria

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The Toxoplasma effector GRA28 promotes parasite dissemination by inducing dendritic cell-like migratory properties in infected macrophages.

Ten Hoeve AL, Braun L, Rodriguez ME, Olivera GC, Bougdour A, Belmudes L, Couté Y,…

Cell Host Microbe 2022 Oct 20;S1931-3128(22)00512-1.

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A brain cyst load-associated antigen is a Toxoplasma gondii biomarker for serodetection of persistent parasites and chronic infection

Dard C, Swale C, Brenier-Pinchart MP, Farhat DC, Bellini V, Robert MG, Cannella D, Pelloux…

BMC Biol. 2021 Feb 9;19(1):25

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A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental genes partitioning in Toxoplasma

Farhat DC, Bowler M, Communie G, Pontier D, Belmudes L, Mas C, Coute Y, Bougdour…

Elife 2021 Jul 15;10:e68312

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A MORC-driven transcriptional switch controls Toxoplasma developmental trajectories and sexual commitment

Farhat DC, Swale C, Dard C, Cannella D, Ortet P, Barakat M, Sindikubwabo F, Belmudes…

Nature Microbiology 2020 Feb 24. doi: 10.1038/s41564-020-0674-4

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Metal-captured inhibition of pre-mRNA processing activity by CPSF3 controls Cryptosporidium infection.

Swale C, Bougdour A, Gnahoui-David A, Tottey J, Georgeault S, *Laurent F, *†Palencia A, *†Hakimi…

Science Translational Medicine 2019 Nov 6;11(517). pii:eaax7161

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The Toxoplasma effector TEEGR promotes parasite persistence by modulating NF-kB signalling via EZH2

Braun L, Brenier-Pinchart MP, Hammoudi PM, Cannella D, Kieffer-Jaquinod S, Vollaire J, Josserand V, Touquet…

Nature Microbiology 2019 Jul;4(7):1208-1220.

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Characterization of a Toxoplasma effector uncovers an alternative GSK3/b-catenin-regulatory pathway of inflammation.

He H, Brenier-pinchart MP, Braun L, Kraut A, Touquet B, Coute Y, Tardieux I, Hakimi…

Elife 2018 Oct 15;7. pii: e39887

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Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites

Sindikubwabo F, Ding S, Hussain T, Ortet P, Barakat M, Baumgarten S, Cannella D, Palencia…

Elife 2017 Nov 4;6. pii: e29391.

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Our activities in pictures

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Our collaborations

  • Matthew Bowler (EMBL-Grenoble outstation, France)
  • Amit Sharma (ICGEB, New Delhi, India)
  • Jeroen Saeij (UC Davis, USA)
  • Isabelle Coppens (Johns Hopkins University, Baltimore, USA)
  • L. David Sibley (Washington University School of Medicine, St. Louis, USA)
  • Dominique Soldati-Favre (Geneva university, Switzerland)
  • Antonio Barragan (Stockholm University, Stockholm, Sweden)
  • Fabrice Laurent (INRAe, Tours, France)
  • Artur Scherf (Pasteur Institute, Paris, France)
  • Thierry Lagrange (CNRS, Perpignan, France)
  • Isabelle Tardieux (CNRS, Grenoble, France)

Our technologies

  • Cell culture and gene editing (CRISPR-Cas9) in Toxoplasma gondii
  • Cell biology (epifluorescence, confocal)
  • Gene expression analyses (Illumina, Nanopore DRS, qRT-PCR)
  • Epigenetic analysis (ChIP-seq, ATAC-seq)
  • Conventional and affinity biochemistry
  • Recombinant protein expression (E. coli, Insect cell)
  • Structural biology (Crystallization, TSA, ITC, Microscale thermophoresis, Alpha Fold)
  • Immunology (ELISA, FACS)